Research teams

Publications

L'ensemble de la production de l'équipe est présenté dans les 'Productions' de l'unité.

The full production of the team is available in the productions section.

 

Sapountzis P., Duport G., Balmand S., Gaget K., Jaubert-Possamai S., Febvay G., Charles H., Rahbé Y., Colella S., Calevro F., 2014. New insight into the RNA interference response against cathepsin-L gene in the pea aphid, Acyrthosiphon pisum: molting or gut phenotypes specifically induced by injection or feeding treatments. Insect Biochemistry and Molecular Biology, in press.
Brinza L., Calevro F., Charles H., 2013. Genomic analysis of the regulatory elements and links with intrinsic DNA structural properties in the shrunken genome of Buchnera. BMC Genomics, 14: 73.
Rabatel A., Febvay G., Gaget K., Duport G., Baa-Puyoulet P., Sapountzis P., Bendridi N., Rey M., Rahbé Y., Charles H., Calevro F., Colella S., 2013. Tyrosine pathway regulation is host-mediated in the pea aphid symbiosis during late embryonic and early larval development. BMC Genomics, 14: 235.
Klein C.C., Cottret L., Kielbassa J., Charles H., Gautier C., Ribeiro de Vasconcelos A.T., Lacroix V., Sagot M.F., 2012. Exploration of the core metabolism of symbiotic bacteria. BMC Genomics, 13: 438 (17 p.).
Charles H., Balmand S., Lamelas A., Cottret L., Pérez-Brocal V., Burdin B., Latorre A., Febvay G., Colella S., Calevro F., Rahbé Y., 2011. A genomic reappraisal of symbiotic function in the aphid / Buchnera symbiosis: reduced transporter sets and variable membrane organisations. PLoS One, 6(12): e29096.
Vellozo A.F., Véron A.S., Baa-Puyoulet P., Huerta-Cepas J., Cottret L., Febvay G., Calevro F., Rahbé Y., Douglas A.E., Gabaldón T., Sagot M.F., Charles H., Colella S., 2011. CycADS: an annotation database system to ease the development and update of BioCyc databases. Database: The Journal of Biological Databases and Curation, 2011: bar008 (11 p.).
Vinuelas J., Febvay G., Duport G., Colella S., Fayard J.M., Charles H., Rahbé Y., Calevro F., 2011. Multimodal dynamic response of the Buchnera aphidicola pLeu plasmid to variations in leucine demand of its host, the pea aphid Acyrthosiphon pisum. Molecular Microbiology, 81: 1271-1285. [DOI] [PubMed] [Article]
 
Vellozo A.F., Véron A.S., Baa-Puyoulet P., Huerta-Cepas J., Cottret L., Febvay G., Calevro F., Rahbé Y., Douglas A.E., Gabaldón T., Sagot M.F., Charles H., Colella S., 2011. CycADS: an annotation database system to ease the development and update of BioCyc databases. Database: The Journal of Biological Databases and Curation, 2011: bar008 (11 p.). [DOI] [Article]
 
Charles H., Balmand S., Lamelas A., Cottret L., Pérez-Brocal V., Burdin B., Latorre A., Febvay G., Colella S., Calevro F., Rahbé Y., 2011. A genomic reappraisal of symbiotic function in the aphid / Buchnera symbiosis: reduced transporter sets and variable membrane organisations. PLoS One, 6(12): e29096. [DOI] [PubMed] [Article]
 
Wilson A.C.C., Ashton P.D., Calevro F., Charles H., Colella S., Febvay G., Jander G., Kushlan P.F., MacDonald S.J., Schwartz J.F., Thomas G.H., Douglas A.E., 2010. Genomic insight into the amino acid relations of the pea aphid, Acyrthosiphon pisum, with its symbiotic bacterium Buchnera aphidicola. Insect Molecular Biology, 19: 249-258. [DOI] [Article]
 
The International Aphid Genomics Consortium, 2010. Genome sequence of the pea aphid Acyrthosiphon pisum. PLoS Biology, 8(2): e1000313 (24 p.). [DOI] [Article]
 
Tagu D., Dugravot S., Outreman Y., Rispe C., Simon J.C., Colella S., 2010. The anatomy of an aphid genome: from sequence to biology. Comptes Rendus Biologies (Académie des Sciences, Paris), 333: 464-473. [DOI] [PubMed] [Article]
 
Cottret L., Wildridge D., Vinson F., Barrett M.P., Charles H., Sagot M.F., Jourdan F., 2010. MetExplore: a web server to link metabolomic experiments and genome-scale metabolic networks. Nucleic Acids Research, 38: W132-W137. [DOI] [PubMed] [Article]
 
Cottret L., Milreu P.V., Acuna V., Marchetti-Spaccamela A., Stougie L., Charles H., Sagot M.F., 2010. Graph-based analysis of the metabolic exchanges between two co-resident intracellular symbionts, Baumannia cicadellinicola and Sulcia muelleri, with their insect host, Homalodisca coagulata. PLoS Computational Biology, 6(9): e1000904. [DOI] [PubMed] [Article]
 
Brinza L., Calevro F., Duport G., Gaget K., Gautier C., Charles H., 2010. Structure and dynamics of the operon map of Buchnera aphidicola sp. strain APS. BMC Genomics, 11: 666 (16p.). [DOI] [Article]
 
Brinza L., Vinuelas J., Cottret L., Calevro F., Rahbé Y., Febvay G., Duport G., Colella S., Rabatel A., Gautier C., Fayard J.M., Sagot M.F., Charles H., 2009. Systemic analysis of the symbiotic function of Buchnera aphidicola, the primary endosymbiont of the pea aphid Acyrthosiphon pisum. Comptes Rendus Biologies (Académie des Sciences, Paris), 332: 1034-1049. [DOI] [PubMed] [Article]
 
Bermingham J., Rabatel A., Calevro F., Vinuelas J., Febvay G., Charles H., Douglas A.E., Wilkinson T., 2009. Impact of host developmental age on the transcriptome of the symbiotic bacterium Buchnera aphidicola in the pea aphid (Acyrthosiphon pisum). Applied and Environmental Microbiology, 75: 7294-7297. [DOI] [PubMed] [Article]
 
Vinuelas J., Calevro F., Remond D., Bernillon J., Rahbé Y., Febvay G., Fayard J.M., Charles H., 2007. Conservation of the links between gene transcription and chromosomal organization in the highly reduced genome of Buchnera aphidicola. BMC Genomics, 8: 143 (04 June 2007), 12 p. [DOI] [PubMed] [Article]
 
Sabater-Munoz B., Legeai F., Rispe C., Bonhomme J., Dearden P., Dossat C., Duclert A., Gauthier J.P., Giblot Ducray D., Hunter W., Dang P., Kambhampati S., Martinez-Torres D., Cortes T., Moya A., Nakabachi A., Philippe C., Prunier-Leterme N., Rahbé Y., Simon J.C., Stern D.L., Wincker P., Tagu D., 2006. Large-scale gene discovery in the pea aphid Acyrthosiphon pisum (Hemiptera). Genome Biology, 7: R21.1-11. [DOI] [PubMed] [Article]
 
Reymond N., Calevro F., Vinuelas J., Morin N., Rahbé Y., Febvay G., Laugier C., Douglas A.E., Fayard J.M., Charles H., 2006. Different levels of transcriptional regulation due to trophic constraints in the reduced genome of Buchnera aphidicola APS. Applied and Environmental Microbiology, 72: 7760-7766. [DOI] [PubMed] [Article]
 
Charles H., Calevro F., Vinuelas J., Fayard J.M., Rahbé Y., 2006. Codon usage bias and tRNA over-expression in Buchnera aphidicola after aromatic amino acid nutritional stress on its host Acyrthosiphon pisum. Nucleic Acids Research, 34: 4583-4592. [DOI] [PubMed] [Article]
 
Reymond N., Charles H., Duret L., Calevro F., Beslon G., Fayard J.M., 2004. ROSO: optimizing oligonucleotide probes for microarrays. Bioinformatics, 20: 271-273. [DOI] [PubMed] [Article]
 
Calevro F., Charles H., Reymond N., Dugas V., Cloarec J.P., Bernillon J., Rahbé Y., Febvay G., Fayard J.M., 2004. Assessment of 35mer amino-modified oligonucleotide based microarray with bacterial samples. Journal of Microbiological Methods, 57: 207-218. [DOI] [PubMed] [Article]
 
Rahbé Y., Digilio M.C., Febvay G., Guillaud J., Fanti P., Pennacchio F., 2002. Metabolic and symbiotic interactions in amino acid pools of the pea aphid, Acyrthosiphon pisum, parasitized by the braconid Aphidius ervi. Journal of Insect Physiology, 48: 507-516. [DOI] [PubMed] [Article]
 
Charles H., Heddi A., Rahbé Y., 2001. A putative insect intracelllar endosymbiont stem clade, whithin the Enterobacteriaceae, infered from phylogenetic analysis based on a heterogeneous model of DNA evolution. Comptes Rendus de l'Académie des Sciences, Paris, 324: 489-494. [DOI] [PubMed] [Article]
 
Febvay G., Rahbé Y., Rynkiewicz M., Guillaud J., Bonnot G., 1999. Fate of dietary sucrose and neosynthesis of amino acids in the pea aphid, Acyrthosiphon pisum, reared on different diets. The Journal of Experimental Biology, 202: 2639-2652. [PubMed] [Article]
 
Charles H., Mouchiroud D., Lobry J., Gonçalves I., Rahbé Y., 1999. Gene size reduction in the bacterial aphid endosymbiont, Buchnera. Molecular Biology and Evolution, 16: 1820-1822. [PubMed] [Article]
 
Charles H., Ishikawa H., 1999. Physical and genetic map of the genome of Buchnera, the primary endosymbiont of the pea aphid Acyrthosiphon pisum. Journal of Molecular Evolution, 48: 142-150. [DOI] [PubMed] [Article]